{ "_id": "6a12b3faacfb0bcc41d1a6bc", "Package": "rtms", "Title": "R Toolkit for Mass Spectrometry", "Version": "0.2.0", "Authors@R": "c(\nperson(\"Mary Ashley\", \"Rimmer\", email=\"maryashley.rimmer@stjude.org\", role = c(\"aut\")),\nperson(\"Nathaniel\", \"Twarog\", email=\"nathaniel.twarog@stjude.org\", role = c(\"aut\", \"cre\")))", "Description": "Quickly imports, processes, analyzes, and visualizes\nmass-spectrometric data. Includes functions for easily\nextracting specific data and measurements from large\n(multi-gigabyte) raw Bruker data files, as well as a set of S3\nobject classes for manipulating and measuring mass\nspectrometric peaks and plotting peaks and spectra using the\n'ggplot2' package.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "LazyData": "true", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 08:14:29 UTC", "User": "root" }, "Author": "Mary Ashley Rimmer [aut], Nathaniel Twarog [aut, cre]", "Maintainer": "Nathaniel Twarog ", "Repository": "https://nathanieltwarog.r-universe.dev", "Date/Publication": "2023-06-06 06:00:02 UTC", "RemoteUrl": "https://github.com/cran/rtms", "RemoteRef": "HEAD", "RemoteSha": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "MD5sum": "07e452ff85b552b10b373f6289bfad24", "_user": "nathanieltwarog", "_type": "src", "_file": "rtms_0.2.0.tar.gz", "_fileid": "ecb2f7297b243117f337c8b4e7896256543e7c1542e215aeac8cd25b7f04c90f", "_filesize": 701064, "_sha256": "ecb2f7297b243117f337c8b4e7896256543e7c1542e215aeac8cd25b7f04c90f", "_created": "2026-05-24T08:14:29.000Z", "_published": "2026-05-24T08:16:58.214Z", "_distro": "noble", "_jobs": [ { "job": 77582952805, "time": 113, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7183575610" }, { "job": 77582952812, "time": 100, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183574109" }, { "job": 77582952792, "time": 69, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7183571011" }, { "job": 77582952814, "time": 82, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183572194" }, { "job": 77582805527, "time": 156, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183563902" }, { "job": 77582952794, "time": 91, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183573024" }, { "job": 77582952800, "time": 78, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7183571782" }, { "job": 77582952797, "time": 79, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7183571953" }, { "job": 77582952806, "time": 64, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7183570466" } ], "_buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/rtms", "_commit": { "id": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "author": "Nathaniel Twarog ", "committer": "cran-robot ", "message": "version 0.2.0\n", "time": 1686031202 }, "_maintainer": { "name": "Nathaniel Twarog", "email": "nathaniel.twarog@stjude.org", "login": "nathanieltwarog", "description": "", "uuid": 17708163 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "nathanieltwarog", "count": 1, "uuid": 17708163 } ], "_userbio": { "uuid": 17708163, "type": "user", "name": "Nathaniel Twarog" }, "_downloads": { "count": 178, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rtms" }, "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/rtms.html", "manual.pdf" ], "_realowner": "nathanieltwarog", "_cranurl": false, "_releases": [ { "version": "0.2.0", "date": "2023-06-06" } ], "_exports": [ "closeBrukerMCFReader", "emptySampleSet", "getBrukerBAFAllMetadata", "getBrukerBAFMetadata", "getBrukerBAFSample", "getBrukerBAFSpectrum", "getBrukerMCFAllMetadata", "getBrukerMCFIndices", "getBrukerMCFIntensities", "getBrukerMCFMetadata", "getBrukerMCFSample", "getBrukerMCFSampleSet", "getBrukerMCFSpectrum", "getBrukerMCFSpots", "getSample", "getSampleFromSpectrum", "getSampleSet", "getSpectrum", "measureSample", "measureSampleSet", "newBrukerBAFReader", "newBrukerMCFReader", "plotRtmsSample", "plotRtmsSampleSet", "plotRtmsSpectrum", "reopen", "reopenBrukerMCFReader", "rtmsPeak", "rtmsPeakList", "rtmsSpectrum" ], "_datasets": [ { "name": "exampleSpectrum", "title": "Simple Example Spectrum", "object": "exampleSpectrum", "class": [ "rtmsSpectrum" ], "fields": [], "table": true, "tojson": false } ], "_help": [ { "page": "emptySampleSet", "title": "Generate an empty RTMS sample set", "topics": [ "emptySampleSet" ] }, { "page": "exampleSpectrum", "title": "Simple Example Spectrum", "topics": [ "exampleSpectrum" ] }, { "page": "getBrukerBAFAllMetadata", "title": "Retrieve all metadata values from a Bruker BAF file", "topics": [ "getBrukerBAFAllMetadata" ] }, { "page": "getBrukerBAFMetadata", "title": "Retrieve specific metadata values from a Bruker BAF file", "topics": [ "getBrukerBAFMetadata" ] }, { "page": "getBrukerMCFAllMetadata", "title": "Retrieve all metadata values from a Bruker MCF file", "topics": [ "getBrukerMCFAllMetadata" ] }, { "page": "getBrukerMCFIntensities", "title": "Retrieve peak intensities directly from an MCF file", "topics": [ "getBrukerMCFIntensities" ] }, { "page": "getBrukerMCFMetadata", "title": "Retrieve specific metadata values from a Bruker BAF file", "topics": [ "getBrukerMCFMetadata" ] }, { "page": "getBrukerMCFSpots", "title": "Get spot names and indices from a Bruker MCF file", "topics": [ "getBrukerMCFIndices", "getBrukerMCFSpots" ] }, { "page": "getSample", "title": "Get an RTMS Sample", "topics": [ "getSample" ] }, { "page": "getBrukerBAFSample", "title": "Extract a sample from a Bruker BAF directory", "topics": [ "getBrukerBAFSample", "getSample.rtmsBrukerBAFReader" ] }, { "page": "getBrukerMCFSample", "title": "Extract a sample from a Bruker MCF directory", "topics": [ "getBrukerMCFSample", "getSample.rtmsBrukerMCFReader" ] }, { "page": "getSampleFromSpectrum", "title": "Extract a sample from an RTMS spectrum object", "topics": [ "getSample.rtmsSpectrum", "getSampleFromSpectrum" ] }, { "page": "getSampleSet", "title": "Get an RTMS Sample Set", "topics": [ "getSampleSet" ] }, { "page": "getBrukerMCFSampleSet", "title": "Extract a sample set from a Bruker MCF directory", "topics": [ "getBrukerMCFSampleSet", "getSampleSet.rtmsBrukerMCFReader" ] }, { "page": "getSpectrum", "title": "Get an RTMS Spectrum", "topics": [ "getSpectrum" ] }, { "page": "getBrukerBAFSpectrum", "title": "Extract a spectrum from a Bruker BAF directory", "topics": [ "getBrukerBAFSpectrum", "getSpectrum.rtmsBrukerBAFReader" ] }, { "page": "getBrukerMCFSpectrum", "title": "Extract a spectrum from a Bruker MCF directory", "topics": [ "getBrukerMCFSpectrum", "getSpectrum.rtmsBrukerMCFReader" ] }, { "page": "measureSample", "title": "Measure peaks in an RTMS sample", "topics": [ "measureSample" ] }, { "page": "measureSampleSet", "title": "Measure peaks and samples in an RTMS sample set", "topics": [ "measureSampleSet" ] }, { "page": "newBrukerBAFReader", "title": "Open a Bruker single-acquisition BAF directory", "topics": [ "newBrukerBAFReader" ] }, { "page": "newBrukerMCFReader", "title": "Open a Bruker multi-acquisition MCF directory", "topics": [ "newBrukerMCFReader" ] }, { "page": "plotRtmsSample", "title": "Plot an RTMS sample object", "topics": [ "plotRtmsSample" ] }, { "page": "plotRtmsSampleSet", "title": "Plot an RTMS sample set object", "topics": [ "plotRtmsSampleSet" ] }, { "page": "plotRtmsSpectrum", "title": "Plot an RTMS spectrum object", "topics": [ "plotRtmsSpectrum" ] }, { "page": "reopen", "title": "Reopen a reader object", "topics": [ "reopen" ] }, { "page": "closeBrukerMCFReader", "title": "Manage an MCF reader file connection", "topics": [ "close.rtmsBrukerMCFReader", "closeBrukerMCFReader", "reopen.rtmsBrukerMCFReader", "reopenBrukerMCFReader" ] }, { "page": "rtmsPeak", "title": "Create an RTMS m/z Peak Object", "topics": [ "rtmsPeak" ] }, { "page": "rtmsPeakList", "title": "Create a list of RTMS m/z peak objects", "topics": [ "rtmsPeakList" ] }, { "page": "rtmsSpectrum", "title": "Create a new RTMS spectrum", "topics": [ "rtmsSpectrum" ] }, { "page": "sampleAndSampleSet", "title": "Functions for creating and manipulating samples and sample sets", "topics": [ "rep.rtmsSample", "rep.rtmsSampleSet", "sampleAndSampleSet", "[.rtmsSampleSet", "[[.rtmsSampleSet", "[[<-.rtmsSampleSet" ] } ], "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_score": 1.4771212547196624, "_indexed": true, "_nocasepkg": "rtms", "_universes": [ "nathanieltwarog" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-05-24T08:16:24.000Z", "distro": "noble", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "10d79faeeedad023a9fb9e4e68c2c012df6c282a5ffcd7675210e6f8c819c597", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.6.0", "os": "linux", "version": "0.2.0", "date": "2026-05-24T08:16:12.000Z", "distro": "noble", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "04fc3d1dd2a258f9d01e5f4ac45392fc5a85c797738db66b4dcf6db79c59cfc6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-05-24T08:15:45.000Z", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "0f7a715aaa52b9f2ee71e49df1837b2c6a0288b724fe9fc3b99a457dc8262376", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.6.0", "os": "mac", "version": "0.2.0", "date": "2026-05-24T08:15:56.000Z", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "d7c467e4d2417de81042e6e9155cdb087cff1c2bc5d30f8285f0422497a052ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-05-24T08:16:15.000Z", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "dada07ae7e648b5f5672bce48ac34b58a87ef910c4942106621adb14e277bfb9", "status": "success", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-05-24T08:15:45.000Z", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "be5ad79f1116d663b98248b0e914b62a912f2cbd810b04fe9fa4a977c04eb2b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-05-24T08:15:46.000Z", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "e68081708d13b61407085b8b7b33054ac138d99b9bff82f7d10b132c22a1d3ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" }, { "r": "4.6.0", "os": "win", "version": "0.2.0", "date": "2026-05-24T08:15:29.000Z", "commit": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "fileid": "867b44cb71a83ea07a740a8da38f192e9b793103ffd9b104065944eab356f662", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nathanieltwarog/actions/runs/26356026506" } ] }