{ "_id": "6ad86ad84b18b9008999a99f", "Package": "rtms", "Title": "R Toolkit for Mass Spectrometry", "Version": "0.2.0", "Authors@R": "c(\nperson(\"Mary Ashley\", \"Rimmer\", email=\"maryashley.rimmer@stjude.org\", role = c(\"aut\")),\nperson(\"Nathaniel\", \"Twarog\", email=\"nathaniel.twarog@stjude.org\", role = c(\"aut\", \"cre\")))", "Description": "Quickly imports, processes, analyzes, and visualizes\nmass-spectrometric data. Includes functions for easily\nextracting specific data and measurements from large\n(multi-gigabyte) raw Bruker data files, as well as a set of S3\nobject classes for manipulating and measuring mass\nspectrometric peaks and plotting peaks and spectra using the\n'ggplot2' package.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "LazyData": "true", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-21 07:28:46 UTC", "User": "root" }, "Author": "Mary Ashley Rimmer [aut], Nathaniel Twarog [aut, cre]", "Maintainer": "Nathaniel Twarog ", "Repository": "https://nathanieltwarog.r-universe.dev", "Date/Publication": "2023-06-06 06:00:02 UTC", "RemoteUrl": "https://github.com/cran/rtms", "RemoteRef": "HEAD", "RemoteSha": "7b8126d7d2ceaded4f36bcba2f196c3aaacb7938", "_user": "nathanieltwarog", "_type": "src", "_file": "rtms_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/02925e451165b58cb315952b3d3107e6b96c7039de2f3f79697ae21a3bd827c7", "_filesize": 699922, 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"Imports" }, { "package": "ggplot2", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "nathanieltwarog", "count": 1, "uuid": 17708163 } ], "_userbio": { "uuid": 17708163, "type": "user", "name": "Nathaniel Twarog", "followers": 1 }, "_downloads": { "count": 227, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rtms" }, "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/rtms.html" ], "_realowner": "nathanieltwarog", "_cranurl": false, "_releases": [ { "version": "0.2.0", "date": "2023-06-06" } ], "_exports": [ "closeBrukerMCFReader", "emptySampleSet", "getBrukerBAFAllMetadata", "getBrukerBAFMetadata", "getBrukerBAFSample", "getBrukerBAFSpectrum", "getBrukerMCFAllMetadata", "getBrukerMCFIndices", "getBrukerMCFIntensities", 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"Retrieve specific metadata values from a Bruker BAF file", "topics": [ "getBrukerBAFMetadata" ] }, { "page": "getBrukerMCFAllMetadata", "title": "Retrieve all metadata values from a Bruker MCF file", "topics": [ "getBrukerMCFAllMetadata" ] }, { "page": "getBrukerMCFIntensities", "title": "Retrieve peak intensities directly from an MCF file", "topics": [ "getBrukerMCFIntensities" ] }, { "page": "getBrukerMCFMetadata", "title": "Retrieve specific metadata values from a Bruker BAF file", "topics": [ "getBrukerMCFMetadata" ] }, { "page": "getBrukerMCFSpots", "title": "Get spot names and indices from a Bruker MCF file", "topics": [ "getBrukerMCFIndices", "getBrukerMCFSpots" ] }, { "page": "getSample", "title": "Get an RTMS Sample", "topics": [ "getSample" ] }, { "page": "getBrukerBAFSample", "title": "Extract a sample from a Bruker BAF directory", "topics": [ "getBrukerBAFSample", "getSample.rtmsBrukerBAFReader" ] }, { "page": "getBrukerMCFSample", "title": "Extract a sample from a Bruker MCF directory", "topics": [ "getBrukerMCFSample", "getSample.rtmsBrukerMCFReader" ] }, { "page": "getSampleFromSpectrum", "title": "Extract a sample from an RTMS spectrum object", "topics": [ "getSample.rtmsSpectrum", "getSampleFromSpectrum" ] }, { "page": "getSampleSet", "title": "Get an RTMS Sample Set", "topics": [ "getSampleSet" ] }, { "page": "getBrukerMCFSampleSet", "title": "Extract a sample set from a Bruker MCF directory", "topics": [ "getBrukerMCFSampleSet", "getSampleSet.rtmsBrukerMCFReader" ] }, { "page": "getSpectrum", "title": "Get an RTMS Spectrum", "topics": [ "getSpectrum" ] }, { "page": "getBrukerBAFSpectrum", "title": "Extract a spectrum from a Bruker BAF directory", "topics": [ "getBrukerBAFSpectrum", "getSpectrum.rtmsBrukerBAFReader" ] }, { "page": "getBrukerMCFSpectrum", "title": "Extract a spectrum from a Bruker MCF directory", "topics": [ "getBrukerMCFSpectrum", "getSpectrum.rtmsBrukerMCFReader" ] }, { "page": "measureSample", "title": "Measure peaks in an RTMS sample", "topics": [ "measureSample" ] }, { "page": "measureSampleSet", "title": "Measure peaks and samples in an RTMS sample set", "topics": [ "measureSampleSet" ] }, { "page": "newBrukerBAFReader", "title": "Open a Bruker single-acquisition BAF directory", "topics": [ "newBrukerBAFReader" ] }, { "page": "newBrukerMCFReader", "title": "Open a Bruker multi-acquisition MCF directory", "topics": [ "newBrukerMCFReader" ] }, { "page": "plotRtmsSample", "title": "Plot an RTMS sample object", "topics": [ "plotRtmsSample" ] }, { "page": "plotRtmsSampleSet", "title": "Plot an RTMS sample set object", "topics": [ "plotRtmsSampleSet" ] }, { "page": "plotRtmsSpectrum", "title": "Plot an RTMS spectrum object", "topics": [ "plotRtmsSpectrum" ] }, { "page": "reopen", "title": "Reopen a reader object", "topics": [ "reopen" ] }, { "page": "closeBrukerMCFReader", "title": "Manage an MCF reader file connection", "topics": [ "close.rtmsBrukerMCFReader", "closeBrukerMCFReader", 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