{ "_id": "6a1f3336b401979e73428128", "Package": "rtmsEcho", "Title": "Extract and Analyze EchoMS Data from Sciex Wiff Files", "Version": "0.2.4", "Authors@R": "c(\nperson(\"Mary Ashley\", \"Rimmer\", email=\"maryashley.rimmer@stjude.org\", role = c(\"aut\")),\nperson(\"Nathaniel\", \"Twarog\", email=\"nathaniel.twarog@stjude.org\", role = c(\"aut\", \"cre\")),\nperson(\"Lei\", \"Yang\", email=\"lei.yang@stjude.org\", role = c(\"aut\")))", "Description": "Read raw and processed data from acoustic ejection mass\nspectrometry (AEMS) files produced by the Sciex EchoMS\ninstrument. Includes functions to create interactive reader\nobjects, extract raw intensity measurements, mass spectra, and\nfully-processed mass-transition intensity areas. Methods for\ndata processing and analysis are described in Rimmer et al.\n(2025) . Supports both\nmultiple reaction monitoring (MRM) and full-scan (neutral loss\nand precursor ion) data formats.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "LazyData": "true", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 07:18:56 UTC", "User": "root" }, "Author": "Mary Ashley Rimmer [aut], Nathaniel Twarog [aut, cre], Lei Yang\n[aut]", "Maintainer": "Nathaniel Twarog ", "Repository": "https://nathanieltwarog.r-universe.dev", "Date/Publication": "2026-01-14 18:10:02 UTC", "RemoteUrl": "https://github.com/cran/rtmsEcho", "RemoteRef": "HEAD", "RemoteSha": "f05999c5d704e746c47fd8012a5a96d34e14c751", "MD5sum": "d5592564852afe4ba45a6eaa40d61305", "_user": "nathanieltwarog", "_type": "src", "_file": "rtmsEcho_0.2.4.tar.gz", "_fileid": "ad66062d71f897cb6cdd78c63eba4a1081851ff2f63b780d676e9c9b698f89b3", "_filesize": 285101, "_sha256": "ad66062d71f897cb6cdd78c63eba4a1081851ff2f63b780d676e9c9b698f89b3", "_created": "2026-05-15T07:18:56.000Z", 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], "_stars": 0, "_contributors": [ { "user": "nathanieltwarog", "count": 1, "uuid": 17708163 } ], "_userbio": { "uuid": 17708163, "type": "user", "name": "Nathaniel Twarog" }, "_downloads": { "count": 123, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rtmsEcho" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/rtmsEcho.html", "manual.pdf" ], "_realowner": "nathanieltwarog", "_cranurl": false, "_releases": [ { "version": "0.2.4", "date": "2026-01-14" } ], "_exports": [ "getAllFullScanAreas", "getAllFullScanSpectra", "getAllMRMAreas", "getAllTIC", "getFullScanAreas", "getFullScanData", "getFullScanSpectrum", "getMRMAreas", "getMRMChromatograms", "getTIC", "getWiffShots", "measureEjections", "newWiffReader", "processAllFullScanAreas", "processAllMRMAreas" ], "_datasets": [ { "name": "exampleWiff", "title": "Example wiff reader object", "object": "exampleWiff", "class": [ "rtmsWiffReaderMRM", "rtmsWiffReader" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "exampleWiff", "title": "Example wiff reader object", "topics": [ "exampleWiff" ] }, { "page": "getAllFullScanAreas", "title": "Get the total area for given masses for all wells", "topics": [ "getAllFullScanAreas" ] }, { "page": "getAllFullScanSpectra", "title": "Extract mass spectra for all wells", "topics": [ "getAllFullScanSpectra" ] }, { "page": "getAllMRMAreas", "title": "Extract the peak areas for MRM mass transitions for all wells", "topics": [ "getAllMRMAreas" ] }, { "page": "getAllTIC", "title": "Extract all total ion chromatograms from a Wiff file", "topics": [ "getAllTIC" ] }, { "page": "getFullScanAreas", "title": "Get the total area for given masses for a particular well", "topics": [ "getFullScanAreas" ] }, { "page": "getFullScanData", "title": "Extract raw Wiff full scan data", "topics": [ "getFullScanData" ] }, { "page": 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