Package: braidReports 1.0.1

braidReports: Visualize Combined Action Response Surfaces and Report BRAID Analyses

Provides functions to visualize combined action data in 'ggplot2'. Also provides functions for producing full BRAID analysis reports with custom layouts and aesthetics, using the BRAID method originally described in Twarog et al. (2016) <doi:10.1038/srep25523>.

Authors:Anang Shelat [aut], Nathaniel R. Twarog [aut, cre]

braidReports_1.0.1.tar.gz
braidReports_1.0.1.zip(r-4.7)braidReports_1.0.1.zip(r-4.6)braidReports_1.0.1.zip(r-4.5)
braidReports_1.0.1.tgz(r-4.6-any)braidReports_1.0.1.tgz(r-4.5-any)
braidReports_1.0.1.tar.gz(r-4.7-any)braidReports_1.0.1.tar.gz(r-4.6-any)
braidReports_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
braidReports/json (API)

# Install 'braidReports' in R:
install.packages('braidReports', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nathanieltwarog/braidreports/issues

Datasets:

On CRAN:

Conda:

4.73 score 1 stars 18 scripts 588 downloads 2 mentions 18 exports 20 dependencies

Last updated from:03c86ed0f5. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK139
source / vignettesOK184
linux-release-x86_64OK145
macos-release-arm64OK101
macos-oldrel-arm64OK113
windows-develOK91
windows-releaseOK91
windows-oldrelOK92
wasm-releaseOK103

Exports:basicBraidAnalysisgeom_braidgeom_braid_contourgeom_braid_glassgeom_braid_smoothkappa_transmakeBraidReportrunBraidAnalysisscale_x_kappascale_y_kappastat_braidstat_braid_contourstat_braid_glassstat_braid_smoothStatBraidStatBraidContourStatBraidGlassStatBraidSmooth

Dependencies:basicdrmbraidrmclicowplotcpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

Plotting BRAID Surfaces
Introduction | Customizing BRAID Heatmaps | Stained Glass Surfaces | Smoothed BRAID Response Surfaces | Response Surface Contours | A Word About Warnings
Rendered fromheatmaps.Rmdusingknitr::rmarkdown

Last update: 2024-09-18
Started: 2024-09-18

Run and Report BRAID Analyses
Introduction | BRAID Report Pages
Rendered frombraidReports.Rmdusingknitr::rmarkdown

Last update: 2024-09-18
Started: 2024-09-18

Transforming BRAID kappa
Introduction | The Merck OPPS Dataset | Plotting with Other Values
Rendered fromkappaTransform.Rmdusingknitr::rmarkdown

Last update: 2024-09-18
Started: 2024-09-18

Readme and manuals

Help Manual

Help pageTopics
Basic BRAID Analysis ConversionbasicBraidAnalysis
BRAID Heatmapsgeom_braid geom_braid_glass stat_braid stat_braid_glass
Smoothed BRAID Surface Contoursgeom_braid_contour stat_braid_contour
Smoothed BRAID Surfacesgeom_braid_smooth stat_braid_smooth
BRAID kappa Transformskappa_trans scale_x_kappa scale_y_kappa
Render a BRAID ReportmakeBraidReport
Best-Fit Bayesian Stabilized Merck OPPS BRAID ValuesmerckValues_stable
Best-Fit Unstabilized Merck OPPS BRAID ValuesmerckValues_unstable
BRAID Surface AnalysisrunBraidAnalysis runBraidAnalysis.default runBraidAnalysis.formula