Package: braidReports 1.0.1
braidReports: Visualize Combined Action Response Surfaces and Report BRAID Analyses
Provides functions to visualize combined action data in 'ggplot2'. Also provides functions for producing full BRAID analysis reports with custom layouts and aesthetics, using the BRAID method originally described in Twarog et al. (2016) <doi:10.1038/srep25523>.
Authors:
braidReports_1.0.1.tar.gz
braidReports_1.0.1.zip(r-4.5)braidReports_1.0.1.zip(r-4.4)braidReports_1.0.1.zip(r-4.3)
braidReports_1.0.1.tgz(r-4.4-any)braidReports_1.0.1.tgz(r-4.3-any)
braidReports_1.0.1.tar.gz(r-4.5-noble)braidReports_1.0.1.tar.gz(r-4.4-noble)
braidReports_1.0.1.tgz(r-4.4-emscripten)braidReports_1.0.1.tgz(r-4.3-emscripten)
braidReports.pdf |braidReports.html✨
braidReports/json (API)
| # Install 'braidReports' in R: |
| install.packages('braidReports', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nathanieltwarog/braidreports/issues
- merckValues_stable - Best-Fit Bayesian Stabilized Merck OPPS BRAID Values
- merckValues_unstable - Best-Fit Unstabilized Merck OPPS BRAID Values
Last updated 2 months agofrom:03c86ed0f5. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | OK | Oct 30 2024 |
| R-4.5-linux | OK | Oct 30 2024 |
| R-4.4-win | OK | Oct 30 2024 |
| R-4.4-mac | OK | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:basicBraidAnalysisgeom_braidgeom_braid_contourgeom_braid_glassgeom_braid_smoothkappa_transmakeBraidReportrunBraidAnalysisscale_x_kappascale_y_kappastat_braidstat_braid_contourstat_braid_glassstat_braid_smoothStatBraidStatBraidContourStatBraidGlassStatBraidSmooth
Dependencies:basicdrmbraidrmclicolorspacecowplotfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr
Plotting BRAID Surfaces
Rendered fromheatmaps.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2024-09-18
Started: 2024-09-18
Run and Report BRAID Analyses
Rendered frombraidReports.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2024-09-18
Started: 2024-09-18
Transforming BRAID kappa
Rendered fromkappaTransform.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2024-09-18
Started: 2024-09-18
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Basic BRAID Analysis Conversion | basicBraidAnalysis |
| BRAID Heatmaps | geom_braid geom_braid_glass stat_braid stat_braid_glass |
| Smoothed BRAID Surface Contours | geom_braid_contour stat_braid_contour |
| Smoothed BRAID Surfaces | geom_braid_smooth stat_braid_smooth |
| BRAID kappa Transforms | kappa_trans scale_x_kappa scale_y_kappa |
| Render a BRAID Report | makeBraidReport |
| Best-Fit Bayesian Stabilized Merck OPPS BRAID Values | merckValues_stable |
| Best-Fit Unstabilized Merck OPPS BRAID Values | merckValues_unstable |
| BRAID Surface Analysis | runBraidAnalysis runBraidAnalysis.default runBraidAnalysis.formula |
