Package: braidrm 1.0.3
braidrm: Fitting Combined Action with the BRAID Response Surface Model
Contains functions for evaluating, analyzing, and fitting combined action dose response surfaces with the Bivariate Response to Additive Interacting Doses (BRAID) model of combined action, along with tools for implementing other combination analysis methods, including Bliss independence, combination index, and additional response surface methods.
Authors:
braidrm_1.0.3.tar.gz
braidrm_1.0.3.zip(r-4.5)braidrm_1.0.3.zip(r-4.4)braidrm_1.0.3.zip(r-4.3)
braidrm_1.0.3.tgz(r-4.4-any)braidrm_1.0.3.tgz(r-4.3-any)
braidrm_1.0.3.tar.gz(r-4.5-noble)braidrm_1.0.3.tar.gz(r-4.4-noble)
braidrm_1.0.3.tgz(r-4.4-emscripten)braidrm_1.0.3.tgz(r-4.3-emscripten)
braidrm.pdf |braidrm.html✨
braidrm/json (API)
| # Install 'braidrm' in R: |
| install.packages('braidrm', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nathanieltwarog/braidrm/issues
- additiveExample - Example Additive Surface
- antagonisticExample - Example Antagonistic Surface
- coactiveExample - Example Coactive Surface
- incompleteExample - Example Partial or Incomplete Surface
- oppositionalExample - Example Oppositional Surface
- protectiveExample - Example Protective Surface
- synergisticExample - Example Synergistic Surface
Last updated 2 months agofrom:57bddc615a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 26 2024 |
| R-4.5-win | OK | Oct 26 2024 |
| R-4.5-linux | OK | Oct 26 2024 |
| R-4.4-win | OK | Oct 26 2024 |
| R-4.4-mac | OK | Oct 26 2024 |
| R-4.3-win | OK | Oct 26 2024 |
| R-4.3-mac | OK | Oct 26 2024 |
Exports:blissDeviationblissReferencebraidrmcalcBraidBootstrapcalcBraidConfIntdeviationSurfaceestimateChouIndexestimateChouIndicesestimateCombinationIndexestimateCombinationIndicesestimateFlippedIAEestimateIAEevalBraidModelevalFlippedBraidModelevalMusycModelevalUrsaModelfindBestBraidfitBraidFlippedfitCoactiveBraid_partialfitCoactiveBraid_purefitMusycModelfitOppositionalBraid_AfitOppositionalBraid_BfitProtectiveBraid_AfitProtectiveBraid_BfitUrsaModelhsaDeviationhsaReferenceinvertBraidModelinvertBraidModel_AinvertBraidModel_BinvertFlippedBraidModelinvertFlippedBraidModel_AinvertFlippedBraidModel_BkappaPriorloeweDeviationloeweReferencereferenceSurfacezipDeviationzipReferencezipSmoothed
Dependencies:basicdrm
Additional Approaches
Rendered fromalternateMethods.Rmdusingknitr::rmarkdownon Oct 26 2024.Last update: 2024-09-18
Started: 2024-09-18
Basic BRAID Usage
Rendered frombasicBraid.Rmdusingknitr::rmarkdownon Oct 26 2024.Last update: 2024-09-18
Started: 2024-09-18
Bayesian Stabilization of kappa
Rendered frombayesianKappa.Rmdusingknitr::rmarkdownon Oct 26 2024.Last update: 2024-09-18
Started: 2024-09-18
BRAID Confidence Intervals
Rendered fromconfidenceIntervals.Rmdusingknitr::rmarkdownon Oct 26 2024.Last update: 2024-09-18
Started: 2024-09-18
Derivation of the BRAID Model
Rendered fromderivation.Rmdusingknitr::rmarkdownon Oct 26 2024.Last update: 2024-09-18
Started: 2024-09-18
Setting BRAID Models and Constraints
Rendered frommodelsAndConstraints.Rmdusingknitr::rmarkdownon Oct 26 2024.Last update: 2024-09-18
Started: 2024-09-18
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example Additive Surface | additiveExample |
| Example Antagonistic Surface | antagonisticExample |
| BRAID Response Surface Fitting | braidrm braidrm.default braidrm.formula print.braidrm print.summary.braidrm summary.braidrm |
| BRAID Parameter Confidence Intervals | calcBraidBootstrap |
| Generic BRAID confidence intervals | calcBraidConfInt |
| Example Coactive Surface | coactiveExample |
| Non-interacting Reference Surfaces | blissDeviation blissReference deviationSurface hsaDeviation hsaReference loeweDeviation loeweReference referenceSurface zipDeviation zipReference zipSmoothed |
| Combination Index | estimateChouIndex estimateChouIndices estimateCombinationIndex estimateCombinationIndices |
| BRAID Response Surface Combined Potency | estimateFlippedIAE estimateIAE estimateIAE.braidrm estimateIAE.braidrmflip estimateIAE.default |
| Evaluate the BRAID response surface model | evalBraidModel |
| Evaluate Flipped BRAID Surfaces | evalFlippedBraidModel |
| Evaluate MuSyC Response Surfaces | evalMusycModel |
| Evaluate URSA response surface model | evalUrsaModel |
| Select Best BRAID Response Fit | findBestBraid findBestBraid.default findBestBraid.formula |
| Fit Flipped BRAID Surfaces | fitBraidFlipped fitCoactiveBraid_partial fitCoactiveBraid_pure fitOppositionalBraid_A fitOppositionalBraid_B fitProtectiveBraid_A fitProtectiveBraid_B |
| MuSyC Response Surface Fitting | fitMusycModel fitMusycModel.default fitMusycModel.formula |
| URSA Response Surface Fitting | fitUrsaModel fitUrsaModel.default fitUrsaModel.formula |
| Example Partial or Incomplete Surface | incompleteExample |
| Invert a BRAID Response Surface Model | invertBraidModel invertBraidModel_A invertBraidModel_B |
| Invert Flipped BRAID Surfaces | invertFlippedBraidModel invertFlippedBraidModel_A invertFlippedBraidModel_B |
| Braid kappa Bayesian Prior | kappaPrior |
| Example Oppositional Surface | oppositionalExample |
| Example Protective Surface | protectiveExample |
| Example Synergistic Surface | synergisticExample |
