Package: braidrm 0.71

braidrm: Fitting Dose Response with the BRAID Combined Action Model

Contains functions for evaluating, analyzing, and fitting combined action dose response surfaces with the Bivariate Response to Additive Interacting Dose (BRAID) model of combined action.

Authors:Nathaniel R. Twarog

braidrm_0.71.tar.gz
braidrm_0.71.zip(r-4.5)braidrm_0.71.zip(r-4.4)braidrm_0.71.zip(r-4.3)
braidrm_0.71.tgz(r-4.4-any)braidrm_0.71.tgz(r-4.3-any)
braidrm_0.71.tar.gz(r-4.5-noble)braidrm_0.71.tar.gz(r-4.4-noble)
braidrm_0.71.tgz(r-4.4-emscripten)braidrm_0.71.tgz(r-4.3-emscripten)
braidrm.pdf |braidrm.html✨
braidrm/json (API)

# Install 'braidrm' in R:
install.packages('braidrm', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/nathanieltwarog/braidrm/issues

Datasets:
  • es1data - Results from Ewings-Sarcoma Experiments
  • es1extdata - Results from Ewings-Sarcoma Experiments
  • es1extplates - Plate Information from Ewings-Sarcoma Experiments
  • es1plates - Plate Information from Ewings-Sarcoma Experiments
  • es8data - Results from Ewings-Sarcoma Experiments
  • es8extdata - Results from Ewings-Sarcoma Experiments
  • es8extplates - Plate Information from Ewings-Sarcoma Experiments
  • es8olatmz - Results from Ewings-Sarcoma Experiments
  • es8plates - Plate Information from Ewings-Sarcoma Experiments
  • ew8data - Results from Ewings-Sarcoma Experiments
  • ew8plates - Plate Information from Ewings-Sarcoma Experiments

On CRAN:

21 exports 1 stars 1.46 score 0 dependencies 1 dependents 2 mentions 16 scripts 172 downloads

Last updated 9 years agofrom:46821550f5. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 24 2024
R-4.5-winNOTEAug 24 2024
R-4.5-linuxNOTEAug 24 2024
R-4.4-winNOTEAug 24 2024
R-4.4-macNOTEAug 24 2024
R-4.3-winNOTEAug 24 2024
R-4.3-macNOTEAug 24 2024

Exports:braidrmbraidrm.defaultbraidrm.formulacalcBRAIDconfintevalBRAIDrsmevalHillEqnfindBestBRAIDfindBestBRAID.defaultfindBestBRAID.formulafindBestHillfindBestHill.defaultfindBestHill.formulagetBRAIDbootstrapgetHillBootstraphillConcCorrectinvertBRAIDrsminvertHillEqnprint.braidrmprint.summary.braidrmrunBRAIDanalysissummary.braidrm

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Fitting Dose Response with the BRAID Combined Action Modelbraidrm-package
BRAID Synergy Dose-Response Modelingbraidrm braidrm.default braidrm.formula print.braidrm print.summary.braidrm summary.braidrm
Calculate General BRAID Confidence IntervalscalcBRAIDconfint
Results from Ewings-Sarcoma Experimentses1data es1extdata es8data es8extdata ew8data
Plate Information from Ewings-Sarcoma Experimentses1extplates es1plates es8extplates es8plates ew8plates
Results from Ewings-Sarcoma Experimentses8olatmz
Calculate BRAID Surface ValuesevalBRAIDrsm
Calculate and Invert Hill EquationevalHillEqn invertHillEqn
Select Best Fitting BRAID Surface ModelfindBestBRAID findBestBRAID.default findBestBRAID.formula
Fit Hill Model with Model SelectionfindBestHill findBestHill.default findBestHill.formula
Bootstrap BRAID Parameter Confidence IntervalsgetBRAIDbootstrap
Bootstrap Hill Equation Parameter Confidence IntervalsgetHillBootstrap
Hill-Based Concentration CorrectionhillConcCorrect
Invert BRAID Response FunctioninvertBRAIDrsm
Run Full BRAID AnalysisrunBRAIDanalysis