Package: rtmsEcho 0.2.4

rtmsEcho: Extract and Analyze EchoMS Data from Sciex Wiff Files

Read raw and processed data from acoustic ejection mass spectrometry (AEMS) files produced by the Sciex EchoMS instrument. Includes functions to create interactive reader objects, extract raw intensity measurements, mass spectra, and fully-processed mass-transition intensity areas. Methods for data processing and analysis are described in Rimmer et al. (2025) <doi:10.1021/acs.analchem.5c03730>. Supports both multiple reaction monitoring (MRM) and full-scan (neutral loss and precursor ion) data formats.

Authors:Mary Ashley Rimmer [aut], Nathaniel Twarog [aut, cre], Lei Yang [aut]

rtmsEcho_0.2.4.tar.gz
rtmsEcho_0.2.4.zip(r-4.7-any)rtmsEcho_0.2.4.zip(r-4.6-any)rtmsEcho_0.2.4.zip(r-4.5-any)
rtmsEcho_0.2.4.tgz(r-4.6-any)rtmsEcho_0.2.4.tgz(r-4.5-any)
rtmsEcho_0.2.4.tar.gz(r-4.7-any)rtmsEcho_0.2.4.tar.gz(r-4.6-any)
rtmsEcho_0.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
rtmsEcho/json (API)

# Install 'rtmsEcho' in R:
install.packages('rtmsEcho', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 179 downloads 15 exports 18 dependencies

Last updated from:f05999c5d7. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK92
source / vignettesOK134
linux-releaseOK91
macos-releaseOK96
macos-oldrelOK73
windows-develOK77
windows-releaseOK65
windows-oldrelOK69
wasm-releaseOK84

Exports:getAllFullScanAreasgetAllFullScanSpectragetAllMRMAreasgetAllTICgetFullScanAreasgetFullScanDatagetFullScanSpectrumgetMRMAreasgetMRMChromatogramsgetTICgetWiffShotsmeasureEjectionsnewWiffReaderprocessAllFullScanAreasprocessAllMRMAreas

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangrtmsS7scalesvctrsviridisLitewithr