Package: rtmsEcho 0.2.4

rtmsEcho: Extract and Analyze EchoMS Data from Sciex Wiff Files

Read raw and processed data from acoustic ejection mass spectrometry (AEMS) files produced by the Sciex EchoMS instrument. Includes functions to create interactive reader objects, extract raw intensity measurements, mass spectra, and fully-processed mass-transition intensity areas. Methods for data processing and analysis are described in Rimmer et al. (2025) <doi:10.1021/acs.analchem.5c03730>. Supports both multiple reaction monitoring (MRM) and full-scan (neutral loss and precursor ion) data formats.

Authors:Mary Ashley Rimmer [aut], Nathaniel Twarog [aut, cre], Lei Yang [aut]

rtmsEcho_0.2.4.tar.gz
rtmsEcho_0.2.4.zip(r-4.7)rtmsEcho_0.2.4.zip(r-4.6)rtmsEcho_0.2.4.zip(r-4.5)
rtmsEcho_0.2.4.tgz(r-4.6-any)rtmsEcho_0.2.4.tgz(r-4.5-any)
rtmsEcho_0.2.4.tar.gz(r-4.7-any)rtmsEcho_0.2.4.tar.gz(r-4.6-any)
rtmsEcho_0.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
rtmsEcho/json (API)

# Install 'rtmsEcho' in R:
install.packages('rtmsEcho', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 138 downloads 15 exports 18 dependencies

Last updated from:f05999c5d7. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK104
source / vignettesOK182
linux-release-x86_64OK110
macos-release-arm64OK152
macos-oldrel-arm64OK160
windows-develOK99
windows-releaseOK68
windows-oldrelOK75
wasm-releaseOK91

Exports:getAllFullScanAreasgetAllFullScanSpectragetAllMRMAreasgetAllTICgetFullScanAreasgetFullScanDatagetFullScanSpectrumgetMRMAreasgetMRMChromatogramsgetTICgetWiffShotsmeasureEjectionsnewWiffReaderprocessAllFullScanAreasprocessAllMRMAreas

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangrtmsS7scalesvctrsviridisLitewithr