Package: rtmsEcho 0.2.4

rtmsEcho: Extract and Analyze EchoMS Data from Sciex Wiff Files

Read raw and processed data from acoustic ejection mass spectrometry (AEMS) files produced by the Sciex EchoMS instrument. Includes functions to create interactive reader objects, extract raw intensity measurements, mass spectra, and fully-processed mass-transition intensity areas. Methods for data processing and analysis are described in Rimmer et al. (2025) <doi:10.1021/acs.analchem.5c03730>. Supports both multiple reaction monitoring (MRM) and full-scan (neutral loss and precursor ion) data formats.

Authors:Mary Ashley Rimmer [aut], Nathaniel Twarog [aut, cre], Lei Yang [aut]

rtmsEcho_0.2.4.tar.gz
rtmsEcho_0.2.4.zip(r-4.7)rtmsEcho_0.2.4.zip(r-4.6)rtmsEcho_0.2.4.zip(r-4.5)
rtmsEcho_0.2.4.tgz(r-4.6-any)rtmsEcho_0.2.4.tgz(r-4.5-any)
rtmsEcho_0.2.4.tar.gz(r-4.7-any)rtmsEcho_0.2.4.tar.gz(r-4.6-any)
rtmsEcho_0.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rtmsEcho/json (API)

# Install 'rtmsEcho' in R:
install.packages('rtmsEcho', repos = c('https://nathanieltwarog.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 123 downloads 15 exports 18 dependencies

Last updated from:f05999c5d7. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK111
source / vignettesOK135
linux-release-x86_64OK106
macos-release-arm64OK120
macos-oldrel-arm64OK150
windows-develOK83
windows-releaseOK66
windows-oldrelOK71
wasm-releaseOK91

Exports:getAllFullScanAreasgetAllFullScanSpectragetAllMRMAreasgetAllTICgetFullScanAreasgetFullScanDatagetFullScanSpectrumgetMRMAreasgetMRMChromatogramsgetTICgetWiffShotsmeasureEjectionsnewWiffReaderprocessAllFullScanAreasprocessAllMRMAreas

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangrtmsS7scalesvctrsviridisLitewithr